chr10:92705802:C>T Detail (hg38)

Information

Genome

Assembly Position
hg19 chr10:94,465,559-94,465,559 View the variant detail on this assembly version.
hg38 chr10:92,705,802-92,705,802

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.836
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Metabolic syndrome X Nominally significant associations were also observed between T2D and the SIRT1 ... BeFree 20503258 Detail
0.211 Diabetes Mellitus, Non-Insulin-Dependent Nominally significant associations were also observed between T2D and the SIRT1 ... BeFree 20503258 Detail
0.204 Metabolic syndrome X Nominally significant associations were also observed between T2D and the SIRT1 ... BeFree 20503258 Detail
0.214 Diabetes Mellitus, Non-Insulin-Dependent In Chinese Han, we replicated the associations between 7 genetic loci and T2D, w... BeFree 20509872 Detail
0.083 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.393 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.466 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.614 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.214 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.340 Diabetes Mellitus, Non-Insulin-Dependent In Chinese Han, we replicated the associations between 7 genetic loci and T2D, w... BeFree 20509872 Detail
0.336 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.314 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
<0.001 gestational diabetes The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in th... BeFree 19002430 Detail
0.452 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
<0.001 gestational diabetes The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in th... BeFree 19002430 Detail
0.090 Diabetes Mellitus, Non-Insulin-Dependent In Chinese Han, we replicated the associations between 7 genetic loci and T2D, w... BeFree 20509872 Detail
0.123 gestational diabetes The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in th... BeFree 19002430 Detail
0.290 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.296 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.003 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
<0.001 gestational diabetes The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in th... BeFree 19002430 Detail
0.090 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.024 gestational diabetes The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in th... BeFree 19002430 Detail
0.341 Diabetes Mellitus, Non-Insulin-Dependent In Chinese Han, we replicated the associations between 7 genetic loci and T2D, w... BeFree 20509872 Detail
0.341 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.181 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.421 Diabetes Mellitus, Non-Insulin-Dependent In Chinese Han, we replicated the associations between 7 genetic loci and T2D, w... BeFree 20509872 Detail
0.057 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.017 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.032 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.176 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.336 Diabetes Mellitus, Non-Insulin-Dependent In Chinese Han, we replicated the associations between 7 genetic loci and T2D, w... BeFree 20509872 Detail
0.293 Diabetes Mellitus, Non-Insulin-Dependent To examine the association of type 2 diabetes susceptibility loci and visceral f... BeFree 22377712 Detail
0.452 Diabetes Mellitus, Non-Insulin-Dependent In Chinese Han, we replicated the associations between 7 genetic loci and T2D, w... BeFree 20509872 Detail
0.421 Diabetes Mellitus, Non-Insulin-Dependent In addition, we also confirmed that three SNPs (rs1111875, rs7923837 and rs50154... BeFree 20550665 Detail
0.214 Diabetes Mellitus, Non-Insulin-Dependent Our results provide clarification to the significant association of rs1111875, r... BeFree 23166797 Detail
Annotation

Annotations

DescrptionSourceLinks
Nominally significant associations were also observed between T2D and the SIRT1 rs3758391 SNP and MS... DisGeNET Detail
Nominally significant associations were also observed between T2D and the SIRT1 rs3758391 SNP and MS... DisGeNET Detail
Nominally significant associations were also observed between T2D and the SIRT1 rs3758391 SNP and MS... DisGeNET Detail
In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-spec... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-spec... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in the CDKN2A-CDKN2B regi... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in the CDKN2A-CDKN2B regi... DisGeNET Detail
In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-spec... DisGeNET Detail
The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in the CDKN2A-CDKN2B regi... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in the CDKN2A-CDKN2B regi... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
The risk alleles of the SNPs rs7756992 and rs7754840 in CDKAL1; rs10811661 in the CDKN2A-CDKN2B regi... DisGeNET Detail
In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-spec... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-spec... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-spec... DisGeNET Detail
To examine the association of type 2 diabetes susceptibility loci and visceral fat accumulation, we ... DisGeNET Detail
In Chinese Han, we replicated the associations between 7 genetic loci and T2D, with risk allele-spec... DisGeNET Detail
In addition, we also confirmed that three SNPs (rs1111875, rs7923837 and rs5015480) in HHEX , one SN... DisGeNET Detail
Our results provide clarification to the significant association of rs1111875, rs5015480 and rs79238... DisGeNET Detail
Gene
-
dbSNP
rs5015480 dbSNP
Genome
hg38
Position
chr10:92,705,802-92,705,802
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs5015480
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.8365
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
14019
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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